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A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments
Caffrey, J. M., & Miller, L. G. (1995). A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments. FEMS Microbiology Ecology, 17, 213-220. doi:10.1016/0168-6496(95)00026-7
A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA
Caffrey, J. M., & Murrell, M. C. (2016). A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA. Aquatic Microbial Ecology and Biogeochemistry: A Dual Perspective, 199-213. doi:10.1007/978-3-319-30259-1_16
Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
Caffrey, J. M., Bano, N., Kalanetra, K., & Hollibaugh, J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. International Society for Microbial Ecology, 1(7), 660-662. doi:10.1038/ismej.2007.79
Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed
Caffrey, J. M., Landing, W. M., Nolek, S. D., Gosnell, K. J., Bagui, S. S., & Bagui, S. C. (2010). Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed: Spatial, seasonal, and inter-annual variability. Atmospheric Chemistry and Physics, 10, 5425-5434. doi:10.5194/acp-10-5425-2010
Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018)
Caffrey, J., & Landing, W. (2013). Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018).
Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida
Landing, W. M., Caffrey, J. M., Nolek, S. D., Gosnell, K. J., & Parker, W. C. (2010). Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida. Atmospheric Chemistry and Physics, 10, 4867-4877. doi:10.5194/acp-10-4867-2010
Benthic nutrient flux in a small estuary in northwest Florida (USA)
DiDonato, G. T., Lores, E. M., Murrell, M. C., Smith, L. M., & Caffrey, J. M. (2006). Benthic nutrient flux in a small estuary in northwest Florida (USA). Gulf and Caribbean Research, 18(1), 15-25.
Benthic processes in South San Francisco Bay
Caffrey, J. M., Hammond, D. E., Kuwabara, J. S., Miller, L. G., & Twilley, R. R. (1996). Benthic processes in South San Francisco Bay: The role of organic inputs and bioturbation. San Francisco Bay: The Ecosystem, 425-442.
Biogeochemical processes in a small California estuary.
Caffrey, J. M., Harrington, N., & Ward, B. (2002). Biogeochemical processes in a small California estuary.: 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs. Marine Ecology - Progress Series, 233, 39-53.
Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA
Caffrey, J. M., Cloern, J. E., & Grenz, C. (1998). Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: Implications for net ecosystem metabolism. Marine Ecology Progress Series, 172, 1-12. doi:10.3354/meps172001
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Effect of nutrient loading on biogeochemical and microbial processes in a New England salt marsh
Caffrey, J. M., Murrell, M. C., Wigand, C., & McKinney, R. (2007). Effect of nutrient loading on biogeochemical and microbial processes in a New England salt marsh. Biogeochemistry, 82, 251-264. doi:10.1007/s10533-007-9068-4
Effect of organic loading on nitrification and denitrification in a marine sediment microcosm
Caffrey, J. M., Sloth, N. P., Kaspar, H. F., & Blackburn, T. H. (1993). Effect of organic loading on nitrification and denitrification in a marine sediment microcosm. FEMS Microbiology Ecology, 12(3), 159-167.
Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary
Murrell, M. C., Campbell, J. G., Hagy, III, J. D., & Caffrey, J. M. (2009). Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary: Pensacola Bay, Florida, USA. Estuarine, Coastal and Shelf Science, 81(4), 501-512. doi:10.1016/j.ecss.2008.12.002
Factors controlling net ecosystem metabolism in U.S. estuaries
Caffrey, J. M. (2004). Factors controlling net ecosystem metabolism in U.S. estuaries. Estuaries, 27(1), 90-101.
High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries
Murrell, M. C., & Caffrey, J. M. (2005). High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries. Gulf and Caribbean Research, 17(1), 95-106. doi:10.18785/gcr.1701.08
High nutrient pulses, tidal mixing and biological response in a small California estuary
Caffrey, J. M., Chapin, T. P., Jannasch, H. W., & Haskins, J. C. (2007). High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales. Estuarine, Coastal and Shelf Science, 71(3), 368-380. doi:10.1016/j.ecss.2006.08.015
Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments
Caffrey, J. M., & Kemp, W. M. (1992). Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments. Limnology and Oceanography, 37(7), 1483-1495. doi:10.4319/lo.1992.37.7.1483
Living oysters and their shells as sites of nitrification and denitrification
Caffrey, J. M., Hollibaugh, J. T., & Mortazavi, B. (2016). Living oysters and their shells as sites of nitrification and denitrification. Marine Pollution Bulletin, 112, 86-90. doi:10.1016/j.marpolbul.2016.08.038
Mass independent fractionation of mercury isotopes as source tracers in sediments
Das, R., Landing, W., Bizimis, M., Odom, L., & Caffrey, J. (2015). Mass independent fractionation of mercury isotopes as source tracers in sediments. Procedia Earth and Planetary Science, 13, 151-157. doi:10.1016/j.proeps.2015.07.036

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