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Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
Caffrey, J. M., Bano, N., Kalanetra, K., & Hollibaugh, J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. International Society for Microbial Ecology, 1(7), 660-662. doi:10.1038/ismej.2007.79
Effect of organic loading on nitrification and denitrification in a marine sediment microcosm
Caffrey, J. M., Sloth, N. P., Kaspar, H. F., & Blackburn, T. H. (1993). Effect of organic loading on nitrification and denitrification in a marine sediment microcosm. FEMS Microbiology Ecology, 12(3), 159-167.
Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed
Caffrey, J. M., Landing, W. M., Nolek, S. D., Gosnell, K. J., Bagui, S. S., & Bagui, S. C. (2010). Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed: Spatial, seasonal, and inter-annual variability. Atmospheric Chemistry and Physics, 10, 5425-5434. doi:10.5194/acp-10-5425-2010
Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA
Caffrey, J. M., Cloern, J. E., & Grenz, C. (1998). Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: Implications for net ecosystem metabolism. Marine Ecology Progress Series, 172, 1-12. doi:10.3354/meps172001
Factors controlling net ecosystem metabolism in U.S. estuaries
Caffrey, J. M. (2004). Factors controlling net ecosystem metabolism in U.S. estuaries. Estuaries, 27(1), 90-101.
Mass independent fractionation of mercury isotopes as source tracers in sediments
Das, R., Landing, W., Bizimis, M., Odom, L., & Caffrey, J. (2015). Mass independent fractionation of mercury isotopes as source tracers in sediments. Procedia Earth and Planetary Science, 13, 151-157. doi:10.1016/j.proeps.2015.07.036
Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida
Landing, W. M., Caffrey, J. M., Nolek, S. D., Gosnell, K. J., & Parker, W. C. (2010). Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida. Atmospheric Chemistry and Physics, 10, 4867-4877. doi:10.5194/acp-10-4867-2010
Effect of nutrient loading on biogeochemical and microbial processes in a New England salt marsh
Caffrey, J. M., Murrell, M. C., Wigand, C., & McKinney, R. (2007). Effect of nutrient loading on biogeochemical and microbial processes in a New England salt marsh. Biogeochemistry, 82, 251-264. doi:10.1007/s10533-007-9068-4
Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments
Caffrey, J. M., & Kemp, W. M. (1992). Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments. Limnology and Oceanography, 37(7), 1483-1495. doi:10.4319/lo.1992.37.7.1483
Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018)
Caffrey, J., & Landing, W. (2013). Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018).
Short exposure to oxygen and sulfide alter nitrification, denitrification, and DNRA activity in seasonally hypoxic estuarine sediments
Jane M., C., Stefano, B., & Conley, D. J. (2019). Short exposure to oxygen and sulfide alter nitrification, denitrification, and DNRA activity in seasonally hypoxic estuarine sediments. FEMS Microbiology Letters, 336(1). doi:10.1093/femsle/fny288
Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L. and Zostera marina L.
Caffrey, J. M., & Kemp, W. M. (1991). Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L. and Zostera marina L. Aquatic Botany, 40(2), 109-128. doi:10.1016/0304-3770(91)90090-R
The effects of human activities and extreme meteorological events on sediment nitrogen dynamics in an urban estuary, Escambia Bay, Florida, USA
Smith, K. A., & Caffrey, J. M. (2009). The effects of human activities and extreme meteorological events on sediment nitrogen dynamics in an urban estuary, Escambia Bay, Florida, USA. Hydrobiologia, 627, 67-85. doi:10.1007/s10750-009-9716-x
Effects of upwelling on short-term variability in microbial and biogeochemical processes in estuarine sediments from Elkhorn Slough, California, USA
Caffrey, J. M., Hollibaugh, J. T., Bano, N., & Haskins, J. (2010). Effects of upwelling on short-term variability in microbial and biogeochemical processes in estuarine sediments from Elkhorn Slough, California, USA. Aquatic Microbial Ecology, 58(3), 261-271. doi:10.3354/ame01387
Living oysters and their shells as sites of nitrification and denitrification
Caffrey, J. M., Hollibaugh, J. T., & Mortazavi, B. (2016). Living oysters and their shells as sites of nitrification and denitrification. Marine Pollution Bulletin, 112, 86-90. doi:10.1016/j.marpolbul.2016.08.038
Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets
Caffrey, J. M., Harrington, N., Solem, I., & Ward, B. B. (2003). Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets. Marine Ecology Progress Series, 248, 27-40. doi:10.3354/meps248027
Thunderstorms increase mercury wet deposition
Holmes, C. D., Krishnamurthy, N. P., Caffrey, J. M., Landing, W. M., Edgerton, E. S., Knapp, K. R., & Nair, U. S. (2016). Thunderstorms increase mercury wet deposition. Environmental Science & Technology, 50(17), 9343-9350. doi:10.1021/acs.est.6b02586
A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments
Caffrey, J. M., & Miller, L. G. (1995). A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments. FEMS Microbiology Ecology, 17, 213-220. doi:10.1016/0168-6496(95)00026-7
Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary
Murrell, M. C., Campbell, J. G., Hagy, III, J. D., & Caffrey, J. M. (2009). Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary: Pensacola Bay, Florida, USA. Estuarine, Coastal and Shelf Science, 81(4), 501-512. doi:10.1016/j.ecss.2008.12.002
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