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Project Oyster Pensacola: Assessment of oyster survival, water quality and the fish and invertebrate community associated with oysters
Albrecht, B., Bremner, K., Hotinger, E., & Caffrey, J. M. (2021). Project Oyster Pensacola: Assessment of oyster survival, water quality and the fish and invertebrate community associated with oysters: Technical Report of Project Oyster Pensacola to the Bream Fishermen Association.
Viable putative Vibrio vulnificus and parahaemolyticus in the Pensacola and Perdido Bays
Potdukhe, T. V., Caffrey, J. M., Rothfus, M., Daniel, C. E., Swords, M., Albrecht, B. B., Jeffrey, W. H., & Waidner, L. A. (2021). Viable putative Vibrio vulnificus and parahaemolyticus in the Pensacola and Perdido Bays: Water column, sediments, and invertebrate biofilms. Frontiers in Marine Science. doi:10.3389/fmars.2021.645755
Nitrogen fixation in subtropical seagrass sediments:
Presley, R. (2021). Nitrogen fixation in subtropical seagrass sediments:: Seasonal patterns in activity in Santa Rosa Sound, Florida, USA. Journal of Marine Science and Engineering, 9(7). doi:10.3390/jmse9070766
Adaptive management as a foundational framework for developing collaborative estuary management programs
Deitch, M. J., Gancel, H. N., Croteau, A. C., Caffrey, J. M., Scheffel, W., Underwood, B., Muller, J. W., Boudreau, D., Cantrell, C. G., Posner, M. J., Bibza, J., McDowell, A., & Albrecht, B. (2021). Adaptive management as a foundational framework for developing collaborative estuary management programs. Journal of Environmental Management, 295. doi:10.1016/j.jenvman.2021.113107
Changing biogeochemistry and invertebrate community composition at newly deployed artificial reefs in the Northeast Gulf of Mexico
Babcock, K. K., Cesbron, F., Patterson III, W. F., Garner, S. B., Waidner, L. A., & Caffrey, J. M. (2020). Changing biogeochemistry and invertebrate community composition at newly deployed artificial reefs in the Northeast Gulf of Mexico. Estuaries and Coasts: Journal of the Estuarine Research Federation. doi:10.1007/s12237-020-00713-4
Patterns in phytoplankton and benthic production on the shallow continental shelf in the northeastern Gulf of Mexico
Cesbron, F., Murrell, M. C., Hagy, M. E., Jeffrey, W. H., Patterson III, W. F., & Caffrey, J. M. (2019). Patterns in phytoplankton and benthic production on the shallow continental shelf in the northeastern Gulf of Mexico. Continental Shelf Research, 179, 105-114. doi:10.1016/j.csr.2019.04.003
Short exposure to oxygen and sulfide alter nitrification, denitrification, and DNRA activity in seasonally hypoxic estuarine sediments
Caffrey, J. M., Bonaglia, S., & Conley, D. J. (2019). Short exposure to oxygen and sulfide alter nitrification, denitrification, and DNRA activity in seasonally hypoxic estuarine sediments. FEMS Microbiology Letters, 336(1). doi:10.1093/femsle/fny288
Seagrass abundance and productivity in Pensacola Bay and Santa Rosa Sound
Seasonal oxygen dynamics in a warm temperate estuary
Murrell, M. C., Caffrey, J. M., Marcovich, D. T., Beck, M. W., Jarvis, B. M., & Hagy III, J. D. (2017). Seasonal oxygen dynamics in a warm temperate estuary: Effects of hydrologic variability on measurements of primary production, respiration, and net metabolism. Estuaries and Coasts. doi:10.1007/s12237-017-0328-9
A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA
Caffrey, J. M., & Murrell, M. C. (2016). A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA. Aquatic Microbial Ecology and Biogeochemistry: A Dual Perspective, 199-213. doi:10.1007/978-3-319-30259-1_16
Living oysters and their shells as sites of nitrification and denitrification
Caffrey, J. M., Hollibaugh, J. T., & Mortazavi, B. (2016). Living oysters and their shells as sites of nitrification and denitrification. Marine Pollution Bulletin, 112, 86-90. doi:10.1016/j.marpolbul.2016.08.038
Thunderstorms increase mercury wet deposition
Holmes, C. D., Krishnamurthy, N. P., Caffrey, J. M., Landing, W. M., Edgerton, E. S., Knapp, K. R., & Nair, U. S. (2016). Thunderstorms increase mercury wet deposition. Environmental Science & Technology, 50(17), 9343-9350. doi:10.1021/acs.est.6b02586
Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA
Hester, C. M., Smith, H. M., Head, M. E., Langsten, H., Linder, S., Manor, E., Norman, J., Sartory, L., & Caffrey, J. M. (2016). Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA. Gulf of Mexico Science: An International Journal, 33(1), 14-25.
Mass independent fractionation of mercury isotopes as source tracers in sediments
Das, R., Landing, W., Bizimis, M., Odom, L., & Caffrey, J. (2015). Mass independent fractionation of mercury isotopes as source tracers in sediments. Procedia Earth and Planetary Science, 13, 151-157. doi:10.1016/j.proeps.2015.07.036
Seasonal and inter-annual patterns in primary production, respiration, and net ecosystem metabolism in three estuaries in the Northeast Gulf of Mexico
Caffrey, J. M., Murrell, M. C., Amacker, K. S., Harper, J. W., Phipps, S., & Woodrey, M. S. (2014). Seasonal and inter-annual patterns in primary production, respiration, and net ecosystem metabolism in three estuaries in the Northeast Gulf of Mexico. Estuaries and Coasts, 37, S222-S241. doi:10.1007/s12237-013-9701-5
Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018)
Caffrey, J., & Landing, W. (2013). Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018).
The contribution of benthic nutrient regeneration to primary production in a shallow eutrophic estuary, Weeks Bay, Alabama
Mortazavi, B., Riggs, A. A., Caffrey, J. M., Genet, H., & Phipps, S. W. (2012). The contribution of benthic nutrient regeneration to primary production in a shallow eutrophic estuary, Weeks Bay, Alabama. Estuaries and Coasts, 35(3), 862-877. doi:10.1007/s12237-012-9478-y
Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed
Caffrey, J. M., Landing, W. M., Nolek, S. D., Gosnell, K. J., Bagui, S. S., & Bagui, S. C. (2010). Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed: Spatial, seasonal, and inter-annual variability. Atmospheric Chemistry and Physics, 10, 5425-5434. doi:10.5194/acp-10-5425-2010
Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida
Landing, W. M., Caffrey, J. M., Nolek, S. D., Gosnell, K. J., & Parker, W. C. (2010). Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida. Atmospheric Chemistry and Physics, 10, 4867-4877. doi:10.5194/acp-10-4867-2010
Effects of upwelling on short-term variability in microbial and biogeochemical processes in estuarine sediments from Elkhorn Slough, California, USA
Caffrey, J. M., Hollibaugh, J. T., Bano, N., & Haskins, J. (2010). Effects of upwelling on short-term variability in microbial and biogeochemical processes in estuarine sediments from Elkhorn Slough, California, USA. Aquatic Microbial Ecology, 58(3), 261-271. doi:10.3354/ame01387

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