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Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary
Murrell, M. C., Campbell, J. G., Hagy, III, J. D., & Caffrey, J. M. (2009). Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary: Pensacola Bay, Florida, USA. Estuarine, Coastal and Shelf Science, 81(4), 501-512. doi:10.1016/j.ecss.2008.12.002
High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries
Murrell, M. C., & Caffrey, J. M. (2005). High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries. Gulf and Caribbean Research, 17(1), 95-106. doi:10.18785/gcr.1701.08
Benthic nutrient flux in a small estuary in northwest Florida (USA)
DiDonato, G. T., Lores, E. M., Murrell, M. C., Smith, L. M., & Caffrey, J. M. (2006). Benthic nutrient flux in a small estuary in northwest Florida (USA). Gulf and Caribbean Research, 18(1), 15-25.
Benthic processes in South San Francisco Bay
Caffrey, J. M., Hammond, D. E., Kuwabara, J. S., Miller, L. G., & Twilley, R. R. (1996). Benthic processes in South San Francisco Bay: The role of organic inputs and bioturbation. San Francisco Bay: The Ecosystem, 425-442.
High nutrient pulses, tidal mixing and biological response in a small California estuary
Caffrey, J. M., Chapin, T. P., Jannasch, H. W., & Haskins, J. C. (2007). High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales. Estuarine, Coastal and Shelf Science, 71(3), 368-380. doi:10.1016/j.ecss.2006.08.015
Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA
Hester, C. M., Smith, H. M., Head, M. E., Langsten, H., Linder, S., Manor, E., Norman, J., Sartory, L., & Caffrey, J. M. (2016). Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA. Gulf of Mexico Science: An International Journal, 33(1), 14-25.
Spatial and seasonal patterns in sediment nitrogen remineralization and ammonium concentrations in San Francisco Bay, California
Caffrey, J. M. (1995). Spatial and seasonal patterns in sediment nitrogen remineralization and ammonium concentrations in San Francisco Bay, California. Estuaries, 18(1), 219-233.
Nitrate sources and sinks in Elkhorn Slough, California
Chapin, T. P., Caffrey, J. M., Jannasch, H. W., Coletti, L. J., Haskins, J. C., & Johnson, K. S. (2004). Nitrate sources and sinks in Elkhorn Slough, California: Results from long-term continuous in situ nitrate analyzers. Estuaries, 27(5), 882-894.
Production, respiration and net ecosystem metabolism in U.S. estuaries
Caffrey, J. M. (2003). Production, respiration and net ecosystem metabolism in U.S. estuaries. Environmental Monitoring and Assessment, 81(1), 207-219.
Progress report submitted to the U.S. Environmental Protection Agency, Region 4
Caffrey, J. M., & Landing, W. M. (2006). Progress report submitted to the U.S. Environmental Protection Agency, Region 4: Atmospheric deposition of mercury and trace metals to the Pensacola Bay watershed.
Biogeochemical processes in a small California estuary.
Caffrey, J. M., Harrington, N., & Ward, B. (2002). Biogeochemical processes in a small California estuary.: 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs. Marine Ecology - Progress Series, 233, 39-53.
Nitrogen cycling in sediments with estuarine populations of Potamogeton perfoliatus and Zostera marina
Caffrey, J. M., & Kemp, W. M. (1990). Nitrogen cycling in sediments with estuarine populations of Potamogeton perfoliatus and Zostera marina. Marine Ecology Progress Series, 66(1), 147-160.
Seagrass abundance and productivity in Pensacola Bay and Santa Rosa Sound
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