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A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments
Caffrey, J. M., & Miller, L. G. (1995). A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments. FEMS Microbiology Ecology, 17, 213-220. doi:10.1016/0168-6496(95)00026-7
A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA
Caffrey, J. M., & Murrell, M. C. (2016). A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA. Aquatic Microbial Ecology and Biogeochemistry: A Dual Perspective, 199-213. doi:10.1007/978-3-319-30259-1_16
Adaptive management as a foundational framework for developing collaborative estuary management programs
Deitch, M. J., Gancel, H. N., Croteau, A. C., Caffrey, J. M., Scheffel, W., Underwood, B., Muller, J. W., Boudreau, D., Cantrell, C. G., Posner, M. J., Bibza, J., McDowell, A., & Albrecht, B. (2021). Adaptive management as a foundational framework for developing collaborative estuary management programs. Journal of Environmental Management, 295. doi:10.1016/j.jenvman.2021.113107
Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
Caffrey, J. M., Bano, N., Kalanetra, K., & Hollibaugh, J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. International Society for Microbial Ecology, 1(7), 660-662. doi:10.1038/ismej.2007.79
Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed
Caffrey, J. M., Landing, W. M., Nolek, S. D., Gosnell, K. J., Bagui, S. S., & Bagui, S. C. (2010). Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed: Spatial, seasonal, and inter-annual variability. Atmospheric Chemistry and Physics, 10, 5425-5434. doi:10.5194/acp-10-5425-2010
Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018)
Caffrey, J., & Landing, W. (2013). Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018).
Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida
Landing, W. M., Caffrey, J. M., Nolek, S. D., Gosnell, K. J., & Parker, W. C. (2010). Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida. Atmospheric Chemistry and Physics, 10, 4867-4877. doi:10.5194/acp-10-4867-2010
Benthic nutrient flux in a small estuary in northwest Florida (USA)
DiDonato, G. T., Lores, E. M., Murrell, M. C., Smith, L. M., & Caffrey, J. M. (2006). Benthic nutrient flux in a small estuary in northwest Florida (USA). Gulf and Caribbean Research, 18(1), 15-25.
Benthic processes in South San Francisco Bay
Caffrey, J. M., Hammond, D. E., Kuwabara, J. S., Miller, L. G., & Twilley, R. R. (1996). Benthic processes in South San Francisco Bay: The role of organic inputs and bioturbation. San Francisco Bay: The Ecosystem, 425-442.
Biogeochemical processes in a small California estuary.
Caffrey, J. M., Harrington, N., & Ward, B. (2002). Biogeochemical processes in a small California estuary.: 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs. Marine Ecology - Progress Series, 233, 39-53.
Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA
Caffrey, J. M., Cloern, J. E., & Grenz, C. (1998). Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: Implications for net ecosystem metabolism. Marine Ecology Progress Series, 172, 1-12. doi:10.3354/meps172001
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Effect of nutrient loading on biogeochemical and microbial processes in a New England salt marsh
Caffrey, J. M., Murrell, M. C., Wigand, C., & McKinney, R. (2007). Effect of nutrient loading on biogeochemical and microbial processes in a New England salt marsh. Biogeochemistry, 82, 251-264. doi:10.1007/s10533-007-9068-4
Effect of organic loading on nitrification and denitrification in a marine sediment microcosm
Caffrey, J. M., Sloth, N. P., Kaspar, H. F., & Blackburn, T. H. (1993). Effect of organic loading on nitrification and denitrification in a marine sediment microcosm. FEMS Microbiology Ecology, 12(3), 159-167.
Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary
Murrell, M. C., Campbell, J. G., Hagy, III, J. D., & Caffrey, J. M. (2009). Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary: Pensacola Bay, Florida, USA. Estuarine, Coastal and Shelf Science, 81(4), 501-512. doi:10.1016/j.ecss.2008.12.002
Factors controlling net ecosystem metabolism in U.S. estuaries
Caffrey, J. M. (2004). Factors controlling net ecosystem metabolism in U.S. estuaries. Estuaries, 27(1), 90-101.
High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries
Murrell, M. C., & Caffrey, J. M. (2005). High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries. Gulf and Caribbean Research, 17(1), 95-106. doi:10.18785/gcr.1701.08
High nutrient pulses, tidal mixing and biological response in a small California estuary
Caffrey, J. M., Chapin, T. P., Jannasch, H. W., & Haskins, J. C. (2007). High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales. Estuarine, Coastal and Shelf Science, 71(3), 368-380. doi:10.1016/j.ecss.2006.08.015
Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments
Caffrey, J. M., & Kemp, W. M. (1992). Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments. Limnology and Oceanography, 37(7), 1483-1495. doi:10.4319/lo.1992.37.7.1483
Living oysters and their shells as sites of nitrification and denitrification
Caffrey, J. M., Hollibaugh, J. T., & Mortazavi, B. (2016). Living oysters and their shells as sites of nitrification and denitrification. Marine Pollution Bulletin, 112, 86-90. doi:10.1016/j.marpolbul.2016.08.038

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