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Project Oyster Pensacola: Assessment of oyster survival, water quality and the fish and invertebrate community associated with oysters
Albrecht, B., Bremner, K., Hotinger, E., & Caffrey, J. M. (2021). Project Oyster Pensacola: Assessment of oyster survival, water quality and the fish and invertebrate community associated with oysters: Technical Report of Project Oyster Pensacola to the Bream Fishermen Association.
Nitrate sources and sinks in Elkhorn Slough, California
Chapin, T. P., Caffrey, J. M., Jannasch, H. W., Coletti, L. J., Haskins, J. C., & Johnson, K. S. (2004). Nitrate sources and sinks in Elkhorn Slough, California: Results from long-term continuous in situ nitrate analyzers. Estuaries, 27(5), 882-894. doi:10.1007/BF02912049
Benthic nutrient flux in a small estuary in northwest Florida (USA)
DiDonato, G. T., Lores, E. M., Murrell, M. C., Smith, L. M., & Caffrey, J. M. (2006). Benthic nutrient flux in a small estuary in northwest Florida (USA). Gulf and Caribbean Research, 18(1), 15-25.
High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries
Murrell, M. C., & Caffrey, J. M. (2005). High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries. Gulf and Caribbean Research, 17(1), 95-106. doi:10.18785/gcr.1701.08
Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018)
Caffrey, J., & Landing, W. (2013). Atmospheric deposition of mercury, trace elements, and major ions around a coal-fired power plant (3002001018).
Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary
Murrell, M. C., Campbell, J. G., Hagy, III, J. D., & Caffrey, J. M. (2009). Effects of irradiance on benthic and water column processes in a Gulf of Mexico estuary: Pensacola Bay, Florida, USA. Estuarine, Coastal and Shelf Science, 81(4), 501-512. doi:10.1016/j.ecss.2008.12.002
The contribution of benthic nutrient regeneration to primary production in a shallow eutrophic estuary, Weeks Bay, Alabama
Mortazavi, B., Riggs, A. A., Caffrey, J. M., Genet, H., & Phipps, S. W. (2012). The contribution of benthic nutrient regeneration to primary production in a shallow eutrophic estuary, Weeks Bay, Alabama. Estuaries and Coasts, 35(3), 862-877. doi:10.1007/s12237-012-9478-y
Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida
Landing, W. M., Caffrey, J. M., Nolek, S. D., Gosnell, K. J., & Parker, W. C. (2010). Atmospheric wet deposition of mercury and other trace elements in Pensacola, Florida. Atmospheric Chemistry and Physics, 10, 4867-4877. doi:10.5194/acp-10-4867-2010
Benthic processes in South San Francisco Bay
Caffrey, J. M., Hammond, D. E., Kuwabara, J. S., Miller, L. G., & Twilley, R. R. (1996). Benthic processes in South San Francisco Bay: The role of organic inputs and bioturbation. San Francisco Bay: The Ecosystem, 425-442.
Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L. and Zostera marina L.
Caffrey, J. M., & Kemp, W. M. (1991). Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L. and Zostera marina L. Aquatic Botany, 40(2), 109-128. doi:10.1016/0304-3770(91)90090-R
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Changing biogeochemistry and invertebrate community composition at newly deployed artificial reefs in the Northeast Gulf of Mexico
Babcock, K. K., Cesbron, F., Patterson III, W. F., Garner, S. B., Waidner, L. A., & Caffrey, J. M. (2020). Changing biogeochemistry and invertebrate community composition at newly deployed artificial reefs in the Northeast Gulf of Mexico. Estuaries and Coasts: Journal of the Estuarine Research Federation, 43, 680-692. doi:10.1007/s12237-020-00713-4
Nitrogen fixation in subtropical seagrass sediments:
Presley, R. (2021). Nitrogen fixation in subtropical seagrass sediments:: Seasonal patterns in activity in Santa Rosa Sound, Florida, USA. Journal of Marine Science and Engineering, 9(7). doi:10.3390/jmse9070766
Viable putative Vibrio vulnificus and parahaemolyticus in the Pensacola and Perdido Bays
Potdukhe, T. V., Caffrey, J. M., Rothfus, M., Daniel, C. E., Swords, M., Albrecht, B. B., Jeffrey, W. H., & Waidner, L. A. (2021). Viable putative Vibrio vulnificus and parahaemolyticus in the Pensacola and Perdido Bays: Water column, sediments, and invertebrate biofilms. Frontiers in Marine Science, 8. doi:10.3389/fmars.2021.645755
Adaptive management as a foundational framework for developing collaborative estuary management programs
Deitch, M. J., Gancel, H. N., Croteau, A. C., Caffrey, J. M., Scheffel, W., Underwood, B., Muller, J. W., Boudreau, D., Cantrell, C. G., Posner, M. J., Bibza, J., McDowell, A., & Albrecht, B. (2021). Adaptive management as a foundational framework for developing collaborative estuary management programs. Journal of Environmental Management, 295. doi:10.1016/j.jenvman.2021.113107
Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed
Caffrey, J. M., Landing, W. M., Nolek, S. D., Gosnell, K. J., Bagui, S. S., & Bagui, S. C. (2010). Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed: Spatial, seasonal, and inter-annual variability. Atmospheric Chemistry and Physics, 10, 5425-5434. doi:10.5194/acp-10-5425-2010
Seasonal oxygen dynamics in a warm temperate estuary
Murrell, M. C., Caffrey, J. M., Marcovich, D. T., Beck, M. W., Jarvis, B. M., & Hagy III, J. D. (2018). Seasonal oxygen dynamics in a warm temperate estuary: Effects of hydrologic variability on measurements of primary production, respiration, and net metabolism. Estuaries and Coasts, 41, 690-707. doi:10.1007/s12237-017-0328-9
Patterns in phytoplankton and benthic production on the shallow continental shelf in the northeastern Gulf of Mexico
Cesbron, F., Murrell, M. C., Hagy, M. E., Jeffrey, W. H., Patterson III, W. F., & Caffrey, J. M. (2019). Patterns in phytoplankton and benthic production on the shallow continental shelf in the northeastern Gulf of Mexico. Continental Shelf Research, 179, 105-114. doi:10.1016/j.csr.2019.04.003
Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA
Hester, C. M., Smith, H. M., Head, M. E., Langsten, H., Linder, S., Manor, E., Norman, J., Sartory, L., & Caffrey, J. M. (2016). Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA. Gulf of Mexico Science: An International Journal, 33(1), 14-25. doi:10.18785/goms.3301.02
Thunderstorms increase mercury wet deposition
Holmes, C. D., Krishnamurthy, N. P., Caffrey, J. M., Landing, W. M., Edgerton, E. S., Knapp, K. R., & Nair, U. S. (2016). Thunderstorms increase mercury wet deposition. Environmental Science & Technology, 50(17), 9343-9350. doi:10.1021/acs.est.6b02586

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