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A historical perspective on eutrophication in the Pensacola Bay estuary, FL, USA
Project Oyster Pensacola: Assessment of oyster survival, water quality and the fish and invertebrate community associated with oysters
Albrecht, B., Bremner, K., Hotinger, E., & Caffrey, J. M. (2021). Project Oyster Pensacola: Assessment of oyster survival, water quality and the fish and invertebrate community associated with oysters: Technical Report of Project Oyster Pensacola to the Bream Fishermen Association.
Changing biogeochemistry and invertebrate community composition at newly deployed artificial reefs in the Northeast Gulf of Mexico
Babcock, K. K., Cesbron, F., Patterson III, W. F., Garner, S. B., Waidner, L. A., & Caffrey, J. M. (2020). Changing biogeochemistry and invertebrate community composition at newly deployed artificial reefs in the Northeast Gulf of Mexico. Estuaries and Coasts: Journal of the Estuarine Research Federation, 43, 680-692. doi:10.1007/s12237-020-00713-4
Nitrogen fixation in subtropical seagrass sediments:
Presley, R. (2021). Nitrogen fixation in subtropical seagrass sediments:: Seasonal patterns in activity in Santa Rosa Sound, Florida, USA. Journal of Marine Science and Engineering, 9(7). doi:10.3390/jmse9070766
Adaptive management as a foundational framework for developing collaborative estuary management programs
Deitch, M. J., Gancel, H. N., Croteau, A. C., Caffrey, J. M., Scheffel, W., Underwood, B., Muller, J. W., Boudreau, D., Cantrell, C. G., Posner, M. J., Bibza, J., McDowell, A., & Albrecht, B. (2021). Adaptive management as a foundational framework for developing collaborative estuary management programs. Journal of Environmental Management, 295. doi:10.1016/j.jenvman.2021.113107
Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA
Caffrey, J. M., Cloern, J. E., & Grenz, C. (1998). Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: Implications for net ecosystem metabolism. Marine Ecology Progress Series, 172, 1-12. doi:10.3354/meps172001
Biogeochemical processes in a small California estuary.
Caffrey, J. M., Harrington, N., & Ward, B. (2002). Biogeochemical processes in a small California estuary.: 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs. Marine Ecology - Progress Series, 233, 39-53. doi:10.3354/meps233039
Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed
Caffrey, J. M., Landing, W. M., Nolek, S. D., Gosnell, K. J., Bagui, S. S., & Bagui, S. C. (2010). Atmospheric deposition of mercury and major ions to the Pensacola (Florida) watershed: Spatial, seasonal, and inter-annual variability. Atmospheric Chemistry and Physics, 10, 5425-5434. doi:10.5194/acp-10-5425-2010
Seasonal and inter-annual patterns in primary production, respiration, and net ecosystem metabolism in three estuaries in the Northeast Gulf of Mexico
Caffrey, J. M., Murrell, M. C., Amacker, K. S., Harper, J. W., Phipps, S., & Woodrey, M. S. (2014). Seasonal and inter-annual patterns in primary production, respiration, and net ecosystem metabolism in three estuaries in the Northeast Gulf of Mexico. Estuaries and Coasts, 37, S222-S241. doi:10.1007/s12237-013-9701-5
Seasonal oxygen dynamics in a warm temperate estuary
Murrell, M. C., Caffrey, J. M., Marcovich, D. T., Beck, M. W., Jarvis, B. M., & Hagy III, J. D. (2018). Seasonal oxygen dynamics in a warm temperate estuary: Effects of hydrologic variability on measurements of primary production, respiration, and net metabolism. Estuaries and Coasts, 41, 690-707. doi:10.1007/s12237-017-0328-9
Patterns in phytoplankton and benthic production on the shallow continental shelf in the northeastern Gulf of Mexico
Cesbron, F., Murrell, M. C., Hagy, M. E., Jeffrey, W. H., Patterson III, W. F., & Caffrey, J. M. (2019). Patterns in phytoplankton and benthic production on the shallow continental shelf in the northeastern Gulf of Mexico. Continental Shelf Research, 179, 105-114. doi:10.1016/j.csr.2019.04.003
Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA
Hester, C. M., Smith, H. M., Head, M. E., Langsten, H., Linder, S., Manor, E., Norman, J., Sartory, L., & Caffrey, J. M. (2016). Comparing productivity and biogeochemistry of native and transplanted Thalassia testudinum and Halodule beaudettei in Big Lagoon, Florida, USA. Gulf of Mexico Science: An International Journal, 33(1), 14-25. doi:10.18785/goms.3301.02
Thunderstorms increase mercury wet deposition
Holmes, C. D., Krishnamurthy, N. P., Caffrey, J. M., Landing, W. M., Edgerton, E. S., Knapp, K. R., & Nair, U. S. (2016). Thunderstorms increase mercury wet deposition. Environmental Science & Technology, 50(17), 9343-9350. doi:10.1021/acs.est.6b02586
Mass independent fractionation of mercury isotopes as source tracers in sediments
Das, R., Landing, W., Bizimis, M., Odom, L., & Caffrey, J. (2015). Mass independent fractionation of mercury isotopes as source tracers in sediments. Procedia Earth and Planetary Science, 13, 151-157. doi:10.1016/j.proeps.2015.07.036
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High nutrient pulses, tidal mixing and biological response in a small California estuary
Caffrey, J. M., Chapin, T. P., Jannasch, H. W., & Haskins, J. C. (2007). High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales. Estuarine, Coastal and Shelf Science, 71(3), 368-380. doi:10.1016/j.ecss.2006.08.015
Nitrate sources and sinks in Elkhorn Slough, California
Chapin, T. P., Caffrey, J. M., Jannasch, H. W., Coletti, L. J., Haskins, J. C., & Johnson, K. S. (2004). Nitrate sources and sinks in Elkhorn Slough, California: Results from long-term continuous in situ nitrate analyzers. Estuaries, 27(5), 882-894. doi:10.1007/BF02912049
Benthic nutrient flux in a small estuary in northwest Florida (USA)
DiDonato, G. T., Lores, E. M., Murrell, M. C., Smith, L. M., & Caffrey, J. M. (2006). Benthic nutrient flux in a small estuary in northwest Florida (USA). Gulf and Caribbean Research, 18(1), 15-25.
Factors controlling net ecosystem metabolism in U.S. estuaries
Caffrey, J. M. (2004). Factors controlling net ecosystem metabolism in U.S. estuaries. Estuaries, 27(1), 90-101. doi:10.1007/BF02803563
High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries
Murrell, M. C., & Caffrey, J. M. (2005). High cyanobacterial abundance in three northeastern Gulf of Mexico estuaries. Gulf and Caribbean Research, 17(1), 95-106. doi:10.18785/gcr.1701.08

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